                                                                        Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_circular

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:16 nt.     Distance to run of Ts=2 nt.   Size=32 nt.     Delta G= -8.50 kcal/mol
Antiterminator: Size=38 nt.     Delta G=-14.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAAGATTCTTGAGATTGGCGATGGAAGCGACGATAGCCGTAAAGATCAGCGGCGGTAC
GAGCGCGCGCAAAAGCTGCACGAAAATGCTGCCGATGGTCTGCAGCGTGACCGAAAGC
CAGTTCGGATTGCCGGCTGCATCGGGGCCGATGTTGCGGGCAACAAGGCCGAGCAGCA
GGCCGATGACCATGGCAATCAGAACCTGAAAGCCGAAATTGCGATAAAAGGGTTTCGA
CCCGGAGGAGCCGGCGGACGTCGTTGCCTGTGACATGATCTGTCTCTTTATTGTGCAA
GAAAACGAGAATG

    Atu0805 Gene: Atu0805     GI: 17934715     BI number: Atu0805     GOG: -------     Description: hypothetical protei   G G  A A  G GC GC CG        CT CG       C  G |  C       GT |  G       TG |  G       TA |  A       GC |  C      C  | CG        TA AT        GT GC        CG CG       |  A T  T       AT T  T       GC TG        GT GC        CG GC        GT GT        GC             TCTTTATTGTGCAAGAAAACGAGAATG     ..................................................................................................................