Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_circular
Characteristics of the secondary structures
Terminator: Distance to gene:211 nt. Distance to run of Ts=3 nt. Size=37 nt. Delta G=-18.00 kcal/mol
Antiterminator: Size=39 nt. Delta G=-11.90 kcal/mol
Anti-antiterminator: Size=29 nt. Delta G= -9.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGGCCATGGAGGCGGAAGTGGCAACGGCGATCCTGATTCACGGCATGGTGGCCGGCAG
CTTCACCGGCCGCAGCCTTGCCGATTTCTTCAGTGGCGAAGACGAGGATTGGGATGGC
GCCCGCGCCATCATCAATGGCAGCGACCGGGCGCGGCTCATAGGCAGCTACGGACGGG
CATTTCATcgcgcccttgttatggcgccgattgtcacggcgcggattgaaccggcgtcggccagatgataacccgttacaccgtgccgctgagg
ccgctcttgaactttgcatgacaggtgacaccGTG
Atu0953
Gene: Atu0953 GI: 17934861 BI number: Atu0953 GOG: NOG09782 Description: conserved hypothetical protei
CA CT
T C G T
T G A C
A G C A
GC GC
GC TA GC
G A C T CG
TA CG CG
GC TG GC
cG AT GC
cG G G TG
a C CG GC
c G GC | A
a A GC | G
g T CG | C
t | | G G C
gC A C T T
gC A A AT
aT CG CG
cG GC GC
CGATTTCTTCAGTGGCGAAGACGAGGATTGGGATGGCGCCCGCGCCATCATCAATGGCAGCGACCGGGCGCGGCTCATAGGCAGCTACGGACGGGCATTTCATcgcgcccttgttatggcgccgattgtcacggcgcggattgaaccggcgtcggccagatgataacccgttacaccgtgccgctgaggccgctcttgaactttgcatgacaggtgacaccGTG
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