Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_circular

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:53 nt.    Distance to gene:20 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G= -7.60 kcal/mol
Antiterminator:    Distance from promoter:26 nt. Size=36 nt.     Delta G= -4.80 kcal/mol
Anti-antiterminator:    Distance from promoter:9 nt.    Size=33 nt.     Delta G= -4.80 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: CTGCAT-taaaat. It has a score value of 63.59 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTGCATgtcagaatgtccttcgataaaatttggaaagctgcataccatgaacattggcccatgcgaatgcgacaatcttccctcatcggctgcctg
acggacgatggtgttttgacaaggcaggcggcgggATT

    Atu1162


Gene: Atu1162     GI: 17935069     BI number: Atu1162     GOG: NOG08209     Description: conserved hypothetical protei


           ac
          g  a
 tt       c  a
a  g      g  t
c  g      t  c
a  c       at
a  c       at         t
 gc        gc       c  g
 ta       |  c      c  a
 at       |  c       gc
 cg       c  t       tg
|  c       gc        cg
c  g       ta       g  a
a  a       at        gc
 ta       c  c       cg
 at        cg        ta
 cg        cg        at
 gc        gc        cg
 tg        gt        tg
                        tgttttgacaaggcaggcggcgggATT
    ..................................................................................................................