                                                                        Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:179 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G= -8.50 kcal/mol
Antiterminator: Size=31 nt.     Delta G= -8.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACACGTCGTTGGTAACGCACTTCTGCCGATGATCACCCTTGCCGGCCTGCAGCTTCCG
ACGATCCTCGGTGGCGCCCTGGTAACGGAGACCGTCTTCACCTGGCCAGGTATGGGGC
GTTTGTTCCTCGATAGCCTTGGTTATCACGACTATCCCGTCGTGATGGGGCTCCTGAT
GTTTTCCGCGATCCTCGTGCTGTTCGGCAGTTTGCTTGCCGACCTGCTGGTCGCCCTG
GTCGATCCGCGCATCAGGCTCGGATGAggcctggtcgccggacggcgcaaccaatcgaaggaaagatcATG

    Atu3047 --- Atu3046 Gene: Atu3047     GI: 17936758     BI number: Atu3047     GOG: COG1173     Description: ABC transporter, membrane spanning protein [oligopeptide] Gene: Atu3046     GI: 17936757     BI number: Atu3046     GOG: COG0665     Description: oxidoreductas   C C  G A  T GC AT        GC GT       G  C GC        TA C  |       CG A  |       CG A  |       AT TA       |  A GC       C  T GC        TG T  T       TG C  |       CG CG        TG CG        GC GC        CG             TTTGTTCCTCGATAGCCTTGGTTATCACGACTATCCCGTCGTGATGGGGCTCCTGATGTTTTCCGCGATCCTCGTGCTGTTCGGCAGTTTGCTTGCCGACCTGCTGGTCGCCCTGGTCGATCCGCGCATCAGGCTCGGATGAggcctggtcgccggacggcgcaaccaatcgaaggaaagatcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components ... can be seen here [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... can be seen here     ..................................................................................................................