Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:181 nt.     Distance to run of Ts=1 nt.   Size=27 nt.     Delta G= -7.80 kcal/mol
Antiterminator: Size=29 nt.     Delta G= -4.20 kcal/mol
Anti-antiterminator:   Size=51 nt.     Delta G=-11.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATCAGAGCACGGCTCGTTTGAGAGGTGAATACAGGCGGAAACACGGAAGAAGAAAACA
CCGTCGCCACCACACCGAGAACAGTATAGGAGGCTAATCTTACGGATGCGCCTTTATA
TTTTGCGTCAGGCTTATTGCGGAACAGCATGAAATCAACTCCTCTGTTGTTGAGAAAC
CGTTCCTCCCGCAGTATTGAAATGGTGAATGAAGTTCTTGTGCGCCGCAACATAGTAA
AAATTGCATTAACTAATTTTCCAATTTTGACCAACAAataggcatctgacgattttggggacgcgaaaATT


    Atu3058


Gene: Atu3058     GI: 17936769     BI number: Atu3058     GOG: -------     Description: hypothetical protei


 GA
A  A
A  A
G  A
A  C
A  A
 GC
 GC
 CG
 AT
C  |
A  |
A  |
A  |
G  |       GA
 GC       A  A        A
 CG       G  C      T  C
 GC       C  A      T  G
 GC        CG        CG
A  A       AT        TA
C  C      |  A       AT
A  C      C  T      A  G
T  A      A  A      T  C
A  |       CG        CG
A  |       CG        GC
 GC       A  A       GC
 TA        CG        AT
 GC        CG        GT
 GC        GC        GT
                        ATATTTTGCGTCAGGCTTATTGCGGAACAGCATGAAATCAACTCCTCTGTTGTTGAGAAACCGTTCCTCCCGCAGTATTGAAATGGTGAATGAAGTTCTTGTGCGCCGCAACATAGTAAAAATTGCATTAACTAATTTTCCAATTTTGACCAACAAataggcatctgacgattttggggacgcgaaaATT
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