Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:195 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-18.40 kcal/mol

                                                                        Nomenclature/Definitions

CAGCACCCTGCTTGCTGCGGTGCGGCCGGTCTGAtccggctgaaccgaattctcctttaacaacagtgacgacgt
gccattcgcaaccgcgaagcgcgtcgttttctgttgcggcgcggcgaagatgcactatggcggcggcacacgaaatccagttttttcctgccaaaaacac
cttgacagatcgcattcttcacgatcacaaataaccaaatggttacaaattgccatgtttgacggaagcggccttcgggaaaaggccgccttgggaggaa
attcatgaaacgtatcggcgtcatcATG

    Atu3116 --- Atu3117 --- Atu3118 --- Atu3119


Gene: Atu3116     GI: 17936827     BI number: Atu3116     GOG: COG0673     Description: oxidoreductase
Gene: Atu3117     GI: 17936828     BI number: Atu3117     GOG: NOG05065     Description: conserved hypothetical protein
Gene: Atu3118     GI: 17936829     BI number: Atu3118     GOG: COG1082     Description: conserved hypothetical protein
Gene: Atu3119     GI: 17936830     BI number: Atu3119     GOG: COG0673     Description: conserved hypothetical protei


          ac
         a  c
          cg
          gc
          cg
          ta
          ta
         a  |
         c  |
          cg
          gc
          tg
          gc
          cg
          at
          gc
          cg
            ttttctgttgcggcgcggcgaagatgcactatggcggcggcacacgaaatccagttttttcctgccaaaaacaccttgacagatcgcattcttcacgatcacaaataaccaaatggttacaaattgccatgtttgacggaagcggccttcgggaaaaggccgccttgggaggaaattcatgaaacgtatcggcgtcatcATG


                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[R] COG0673 Predicted dehydrogenases and related proteins ... can be seen here
[G] COG1082 Sugar phosphate isomerases/epimerases ... can be seen here
[R] COG0673 Predicted dehydrogenases and related proteins ... can be seen here

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