Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:23 nt.     Distance to run of Ts=1 nt.   Size=28 nt.     Delta G=-21.20 kcal/mol

                                                                        Nomenclature/Definitions

AAGGACGGCAATGTCCACGCCATCTGGCACCAGTTCTACAACAACCCGTATCAGTTCG
TGGCCATTCAGGAAATTGCCAAGTGGCTGCACCCGGATCTGTTCAAAGACCTTGACCC
CGAGGCGACCTTCAAGGAATTGCATGCCCGCTTCCTGCCGCTCGACTACAAGTCCGGC
TACTTCGTGTCGCTGAAGGATGCGAAATAAgacagggacggtgaaggggagcgccgtccgatcgatggatgaagccgc
agccctgcggcttcatcgttttgtttaggaactcagtgaggatttctcATG

    Atu3390 --- Atu3389 --- fecE


Gene: Atu3390     GI: 17937098     BI number: Atu3390     GOG: COG0614     Description: ABC transporter, substrate binding protein [iron]
Gene: Atu3389     GI: 17937097     BI number: Atu3389     GOG: COG0609     Description: ABC transporter, membrane spanning protein [iron]
Gene: fecE     GI: 17937096     BI number: Atu3388     GOG: COG1120     Description: ABC transporter, nucleotide binding/ATPase protein [iron


          cc
         g  c
          at
          cg
          gc
          cg
          cg
          gc
          at
          at
          gc
          ta
          at
          gc
            gttttgtttaggaactcagtgaggatttctcATG


                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component ... can be seen here
[P] COG0609 ABC-type Fe3+-siderophore transport system, permease component ... can be seen here
[PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components ... can be seen here

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