Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_linear

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:192 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-19.80 kcal/mol

                                                                        Nomenclature/Definitions

ttggctggaaggcgacgcgccgcaggcttgccacgtgaggcacgtcgaaatctaaccggcttccggagaagacgccctgtgcccgagtaatttcgggcac
agcgtgttttgcgcgccaaatgcagccggatctccgttcacccgtcacaaaaagaagaaatcccgcctctagaatctcctttcgaatcctcctgaaagga
tcgcagaaggcattgggcacgacggcaattttcagcccttgcaaataaacattatacattatatgataatatatactaatttagcaaacaggagaaggcg
ATG

    Atu3465 --- Atu3466 --- Atu3467 --- Atu3468


Gene: Atu3465     GI: 17937173     BI number: Atu3465     GOG: COG0491,COG3453     Description: metallo-beta-lactamase superfamily protein
Gene: Atu3466     GI: 17937174     BI number: Atu3466     GOG: COG0640     Description: transcriptional regulator, ArsR family
Gene: Atu3467     GI: 17937175     BI number: Atu3467     GOG: COG2391     Description: conserved hypothetical protein
Gene: Atu3468     GI: 17937176     BI number: Atu3468     GOG: COG2391     Description: conserved hypothetical protei


          aa
         t  t
          gt
          at
          gc
          cg
          cg
          cg
          gc
          ta
          gc
          ta
         c  |
         c  |
          cg
          gc
          cg
            tgttttgcgcgccaaatgcagccggatctccgttcacccgtcacaaaaagaagaaatcccgcctctagaatctcctttcgaatcctcctgaaaggatcgcagaaggcattgggcacgacggcaattttcagcccttgcaaataaacattatacattatatgataatatatactaatttagcaaacaggagaaggcgATG


                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[R] COG0491 Zn-dependent hydrolases, including glyoxylases ... can be seen here
[S] COG3453 Uncharacterized protein conserved in bacteria ... can be seen here
[K] COG0640 Predicted transcriptional regulators ... can be seen here
[R] COG2391 Predicted transporter component ... can be seen here
[R] COG2391 Predicted transporter component ... can be seen here

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