Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_linear
Characteristics of the secondary structures
Terminator: Distance to gene:146 nt. Distance to run of Ts=2 nt. Size=38 nt. Delta G=-10.19 kcal/mol
Antiterminator: Size=30 nt. Delta G= -9.30 kcal/mol
Anti-antiterminator: Size=78 nt. Delta G=-15.35 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTTTAATCTGATGATTTGTGGTCCAAGGCGGACCGGATTGTCATATTTATAATGCGTC
AGATGATAGATGCTCGCTTTGATCGCCATtaatctgccttgcccggttttccggtttatgcggttgtccgcccctctga
aattaccgggattttgtgcaatgcaggaaaagaaagcaaggatcatttccgggggtagaacattgttggttgaggccgcgctgtctgcctcaggaagaat
ggtccgggcttatcaatcatcgccgctgagatttcgccgcgattgtggacaaggtcgaacagcGTG
Atu3864
Gene: Atu3864 GI: 17937568 BI number: Atu3864 GOG: ------- Description: hypothetical protei
A
G T
A G
T C
AT
GC
TG
| C
AT
GT
AT
CG
TA
| T
GC
CG
| C
GC
TA
AT tg
At t t
Ta gc
A a gc
T t cg
T c gc
T t | c
A g | c
T c tt | c
A c t t | t
C t gc | c
T t gc | t
G g cg | g
T c cg | a
T | c t t a
A | g t a a
Gc t t t t
Gc t a t t
Cg c t ta
Cg cg gc
At gc gc
Gt tg cg
Gt cg cg
gattttgtgcaatgcaggaaaagaaagcaaggatcatttccgggggtagaacattgttggttgaggccgcgctgtctgcctcaggaagaatggtccgggcttatcaatcatcgccgctgagatttcgccgcgattgtggacaaggtcgaacagcGTG
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