Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_linear
Characteristics of the secondary structures
Terminator: Distance to gene:165 nt. Distance to run of Ts=2 nt. Size=28 nt. Delta G=-13.30 kcal/mol
Antiterminator: Size=65 nt. Delta G= -6.82 kcal/mol
Anti-antiterminator: Size=27 nt. Delta G= -4.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GATTCACGTCTGTCACcaatttctgttgcgattaactcgcaataccatccgttatggaatcacagatgtcaacgctattgcaaatcat
tctcaatttaactgatttcggaaatgtccgaaattggtgcgtttttggccggacggaggcagcccggttaaacttttttcaatgagaaagcggcactatc
gcagggctcggacagcgtggtccgtggcttgtcccgcgtgtgttcctcatctttcgagccacggtccggggcgagggcttaaggcggggtacttgatgtc
aggatgttgcggGTG
Atu4472
Gene: Atu4472 GI: 17938161 BI number: Atu4472 GOG: NOG13333 Description: hypothetical protei
at
t t
cg
gc
c a
a a
a a
c t
t |
gc
ta
at
gt
| c
| t
| c
| a
| a
| t
| t
| t
| a
a a
c c c
a a at at
cg cg a g
ta ta at
at at gc
a g at gc
g t gt cg
gc gc ta
ta tg ta
a | | g ta
t | a a at
ta ta g t
gc ta t g
cg gt cg
Gc cg at
gcgtttttggccggacggaggcagcccggttaaacttttttcaatgagaaagcggcactatcgcagggctcggacagcgtggtccgtggcttgtcccgcgtgtgttcctcatctttcgagccacggtccggggcgagggcttaaggcggggtacttgatgtcaggatgttgcggGTG
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