Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_pl-AT
Characteristics of the secondary structures
Terminator: Distance to gene:33 nt. Distance to run of Ts=0 nt. Size=37 nt. Delta G=-12.50 kcal/mol
Antiterminator: Size=47 nt. Delta G=-18.50 kcal/mol
Anti-antiterminator: Size=56 nt. Delta G= -6.37 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
cggctgtcggagaagcttgtcgagcggctggaaaagatggaactggtcgaggagagctccatccgcggtgaaccggtgctacagttgaccactgtcggac
aggcgatcaaggcgcagctgcttcaataatctgtctgcgccggctttgcatccgttggaaagacatccacctcaccacatgaaagcctaaccgggcgacg
ctactgaccaatgttttgatataaaaattggtcagtaacgcgggagttgccatcgtgaccaatttttgtatataatttttggacacaatgtaggacaact
ATG
Atu5045 --- Atu5044
Gene: Atu5045 GI: 17938633 BI number: Atu5045 GOG: ------- Description: conserved hypothetical protein
Gene: Atu5044 GI: 17938632 BI number: Atu5044 GOG: NOG08233 Description: conserved hypothetical protei
ac
a c
tg
cg
cg
gc
a g at
a a g a
a c t t
g g ta gg
t c ta c g
a t ta g a
c a g a cg
a c ta at
c | at at
c | at tg
at cg gc
cg cg | c
ta at | a
c c gc | t
c c ta | c
a a cg | g
c | at at
c | ta cg
ta c a ta
at gc gc
cg cg gc
at a | ta
gt gc ta
at cg at
ttttgtatataatttttggacacaatgtaggacaactATG
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