Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_pl-AT
Characteristics of the secondary structures
Terminator: Distance to gene:196 nt. Distance to run of Ts=0 nt. Size=33 nt. Delta G= -8.40 kcal/mol
Antiterminator: Size=42 nt. Delta G= -8.70 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G=-10.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tatcccaggatgctgtcgactgcgagcgattagagatctgacgccgggaaaactgacgctgagctttggccgcttgtcgtcctccagttgcaggcaggtt
tttttgcagactcgatcattccaaccccgcgttctaatagtagcacgggtctttatgatttgtgtcggcatcacgagcctcggcctggaacgaatctgaa
gagaagggcggacgcgagagcggcggaaaaaaatcacgaaactgaaagaacgtcgggaccgtgcggagccctgctggagcaggccgggtttgccatcgac
ATG
Atu5340
Gene: Atu5340 GI: 17938924 BI number: Atu5340 GOG: ------- Description: hypothetical protei
ga
a t
gc
at
tg
ta g
a | t a
gc cg
cg gc
gc c t
a | at tc
gc gt c c
cg tg c a
| g cg t g
| g a c g t
| a a c c t
g a a g tg
t a a | gc
c a gc ta
a c gt tg
gt gt cg
cg cg gc
ta c t | a
gc gc cg
t | cg cg
cg at gt
gc gc gt
tttttgcagactcgatcattccaaccccgcgttctaatagtagcacgggtctttatgatttgtgtcggcatcacgagcctcggcctggaacgaatctgaagagaagggcggacgcgagagcggcggaaaaaaatcacgaaactgaaagaacgtcgggaccgtgcggagccctgctggagcaggccgggtttgccatcgacATG
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