Gene putatively regulated by attenuation in A_tumefaciens_C58_UWash_pl-AT
Characteristics of the secondary structures
Terminator: Distance to gene:199 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-10.20 kcal/mol
Antiterminator: Size=42 nt. Delta G=-17.12 kcal/mol
Anti-antiterminator: Size=35 nt. Delta G=-12.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATACTTCGAGACGGCGATCTGCGCAAGAAGCGCTTCCGTCGGAATGCCCGCCTCGATA
ATGTGCGCGGGTGCGGCGGCCTGAATGACGCCGTCTTCATTTTTGAAGGCATACTTCG
GTCGGCGTGTGACGATGACGCGGAACTTCGCCGGCACGACGTCAAGTCGCTCCGAGAC
GTCTTCTCCGATCAGCACCTTCTGTTTGCCGACGTGTTCGGGCAGTTCATCCGGCTCG
ATTACCACttcgacccgctcaagatgaggagcaaaacccttgcgcggtctcggcggacgcttttcagcATG
Atu5368
Gene: Atu5368 GI: 17938952 BI number: Atu5368 GOG: ------- Description: hypothetical protei
A
T A
A T
G G
C T
tt T G
t c C C
ta CG
cg GC GA
gc CG T A
| A CG C T
c T CG C G
a G GT G A
gC TG GC
gC A | CG
cG A | GC
gT G | GC
gC GC CG
cG CG GT
t G TG T C
c A GC GT
tA CG GT
gT CG GC
ATTTTTGAAGGCATACTTCGGTCGGCGTGTGACGATGACGCGGAACTTCGCCGGCACGACGTCAAGTCGCTCCGAGACGTCTTCTCCGATCAGCACCTTCTGTTTGCCGACGTGTTCGGGCAGTTCATCCGGCTCGATTACCACttcgacccgctcaagatgaggagcaaaacccttgcgcggtctcggcggacgcttttcagcATG
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