                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:100 nt.     Distance to run of Ts=2 nt.   Size=25 nt.     Delta G= -7.50 kcal/mol
Antiterminator: Size=44 nt.     Delta G=-13.20 kcal/mol
Anti-antiterminator:   Size=48 nt.     Delta G= -7.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTCTCCTCCTCCGATTATGAGCACGTTTCTGGGGTTTGGGTGTGCGTGGAGTGGAACG
TGTGCGAGGTACTCGTGGTAGAGAAATTCGTACTTCTCGTCCAGCTGAACCACTCCGT
CGAGGATAAGCATTCTCCCGAACTCAGGACTTTCAATTACCTGTATTTCCTGGTAGGG
ACTCTTTCCTTGGTAGAGTATTTTTGAAACGGTGTAGCAGTGTCTTATCGGAGCGTAA
GGATCCCTTTCTATGAAAACAATGTCCCTCATatcactattctaacctaaacgttaaaatgtattcccATG

    mog Gene: mog     GI: 15605657     BI number: aq_061     GOG: COG0521     Description: molybdenum cofactor biosynthesis MO   C G  A A  T A  T T  C AT        TA GC       T  C GC       A  C A  |       AT GC        CG CG       T  T TA       T  A |  A      T  T |  C      C  T |  T       AT |  C       GC         C G  A       GC       T  T CG        AT       C  T CG        CG        AT TA       T  |       GC C  C       CG        GC A  T       AT        GT C  |      A  A       AT C  |      G  |       TG AT        CG       G  G AT        CG        GT GC        CG        TA TA        TA        CG                         AGTATTTTTGAAACGGTGTAGCAGTGTCTTATCGGAGCGTAAGGATCCCTTTCTATGAAAACAATGTCCCTCATatcactattctaacctaaacgttaaaatgtattcccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [H] COG0521 Molybdopterin biosynthesis enzymes ... can be seen here     ..................................................................................................................