                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:92 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G= -9.30 kcal/mol
Antiterminator: Size=40 nt.     Delta G= -7.90 kcal/mol
Anti-antiterminator:   Size=53 nt.     Delta G=-13.05 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGCGCAGGGTCCAGCTATCACTAAAAACTTTTCCATaactactaatttaaccttactctaaaaaagagctgga
agaaacgcccgagaaggtgggaaatcgtaaagagaatagccccttcagccttgtaaaagtaaacgataaagaaaacaagaacgctgaggaggaaaaacct
cacgggaaaggttactatgggatttttcccttttttggctcttctgtatatgctttcgttgtaaaggaaaccgcttaaaaagcctataatacatattgct
ggacgttccatttctggaaaggataacATG

    aq_083 Gene: aq_083     GI: 15605680     BI number: aq_083     GOG: COG2200     Description: hypothetical protei cg a  a a  t a  a t  a g  a a  g a  a       aa a  a      g  a a  a      g  a ta       a  a gc        gc ta        gc ta        at cg        gc         a |  a       ta       t  t |  a      c  |      c  g |  c       gc       a  g cg        cg        tg gc       |  g       ta at       a  g       gt cg       a  a       gt ta       g  a       at tg       a  a       at cg       a  g       at c  a       cg        gc cg        at        gc cg        at        gc                         ttttttggctcttctgtatatgctttcgttgtaaaggaaaccgcttaaaaagcctataatacatattgctggacgttccatttctggaaaggataacATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG2200 FOG: EAL domain ... can be seen here     ..................................................................................................................