                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:30 nt.     Distance to run of Ts=0 nt.   Size=16 nt.     Delta G=-10.60 kcal/mol
Antiterminator: Size=22 nt.     Delta G= -7.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

taggaaccctgcacgcctgtgtctaaaaaataacgctttatcaataacttattaaacttctgaccctcacgaaacgaacgttaatttccgctaacctgag
gttctgcaaacttgagtatacctttataaaatttttacccttgattttcaatcccttcagccctattgcatcatgatttcatttcatcacgtcatcaaag
catcactcattgagacccataaaccatattcaattgccaaggagccaggaggggctttttagcccctttttaaaagtatatcacatatttttaatttaat
GTG

    aq_388 --- aq_389 --- aq_390 --- aq_391 --- aq_392 Gene: aq_388     GI: 15605892     BI number: aq_388     GOG: -------     Description: putative protein Gene: aq_389     GI: 15605893     BI number: aq_389     GOG: COG2210     Description: hypothetical protein Gene: aq_390     GI: 15605894     BI number: aq_390     GOG: COG2044     Description: putative protein Gene: aq_391     GI: 15605895     BI number: aq_391     GOG: COG1150     Description: putative protein Gene: aq_392     GI: 15605896     BI number: aq_392     GOG: COG2048     Description: putative protei ga g  g a  g cg        tt cg       t  t gc        ta at        cg gt        gc gt        gc at        gc at        gc             tttttaaaagtatatcacatatttttaatttaatGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG2210 Uncharacterized conserved protein ... can be seen here [R] COG2044 Predicted peroxiredoxins ... can be seen here [C] COG1150 Heterodisulfide reductase, subunit C ... can be seen here [C] COG2048 Heterodisulfide reductase, subunit B ... can be seen here     ..................................................................................................................