                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:92 nt.    Distance to gene:84 nt.     Distance to run of Ts=1 nt.   Size=28 nt.     Delta G= -9.80 kcal/mol
Antiterminator:    Distance from promoter:65 nt. Size=42 nt.     Delta G= -7.95 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTAACA-TAAATT. It has a score value of 60.24 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTAACACCTACTTCCCTCAAAGCCCATAAATTCGCCCTGTAAGGGACTAGGTGAGGGG
GGTATTCATGCCCCCTTCCGTGTCTCGCTAAAAAGGCTACTTTTTTTCCTTCTACCTC
CGCTATTACCACGGGAGAGGAAGGCTCTCCGAAGGGAGTTTTTACCTGAACCTCTTCT
TTTACCTTTATGCCGGGGAGGTTGTAGAGTCCGCTTCCGCCTATTATTCCGAGCATaa
aataaatcttaATG

    rimI Gene: rimI     GI: 15606021     BI number: aq_567     GOG: COG0456     Description: ribosomal-protein-alanine acetyltransferas GC C  T C  A T  T C  T C  A A  C        A T  C      A  G C  A      G  G T  C       GC TG        AT CG        GC CG        AT TA        GC TG        GC TA       |  G TG       G  A TG       C  A TA       A  G TA        CG CG        CG             AGTTTTTACCTGAACCTCTTCTTTTACCTTTATGCCGGGGAGGTTGTAGAGTCCGCTTCCGCCTATTATTCCGAGCATaaaataaatcttaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG0456 Acetyltransferases ... can be seen here     ..................................................................................................................