Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:110 nt.     Distance to run of Ts=1 nt.   Size=18 nt.     Delta G= -6.00 kcal/mol
Antiterminator: Size=49 nt.     Delta G= -4.11 kcal/mol
Anti-antiterminator:   Size=58 nt.     Delta G= -5.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCTCTTCTTCACCGATCTTTAACTTCCCGAAGGGCTTTCCCTCTATGAATTCGTAAAC
GAAGAAGTCCTCGCCTTTGAAGAGTATCTGAGGAAAACCTTTAAGCCCTTTCAATTTT
TCCAGTATTTCAGCTTCTTTCTGTATCGCCTTCACTTTATCCGGAGCTTTTGCCACTT
TTATGGCAACCTTTTTACCCCTCCAGTATCCCGTGTAAACCTTTCCCCTCCAACCTTC
TGCGAGCTCCTGTAAGTTTTGAACTTCCTTTATAAATTCTGAGAACTTCATaccttatattt
aatagaATG

    def --- aq_581


Gene: def     GI: 15606030     BI number: aq_579     GOG: COG0242     Description: polypeptide deformylase
Gene: aq_581     GI: 15606031     BI number: aq_581     GOG: -------     Description: putative protei


 CC
G  C
 AT
 AT
T  T
T  C
T  A        C
C  A      C  T
C  T      G  T
 AT       C  C
 AT       T  A
 AT       A  C
 AT       T  T
 GC       G  T
 GC       T  T
|  A      C  A
|  G      T  T
|  T      T  C
|  A      T  C
|  T       CG
|  T       TG
 AT        TA
 GC        CG
 TA        GC        TT
 CG        AT       T  T
T  C      C  T      C  A
A  T      T  T       AT
T  T      T  |       CG
 GC       T  |       CG
 AT        AT        GC
 GT        TG        TA
 AT        GC        TA
                        CCTTTTTACCCCTCCAGTATCCCGTGTAAACCTTTCCCCTCCAACCTTCTGCGAGCTCCTGTAAGTTTTGAACTTCCTTTATAAATTCTGAGAACTTCATaccttatatttaatagaATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[J] COG0242 N-formylmethionyl-tRNA deformylase ... can be seen here

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