                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:92 nt.     Distance to run of Ts=1 nt.   Size=34 nt.     Delta G= -9.70 kcal/mol
Antiterminator: Size=74 nt.     Delta G=-24.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGCTATTTTTGCTATCGTGTTTGCCGTGGCCGGTGCTATTAAAAAAACGTCTGCCCAC
CTCGCTAAGTTTATATGGGCAAGGGGTTCTTCTTCCCAGTCCTTATCCGTATACGCTT
TATTCCCGCTCAAGGTTTGAAAAGTTAGTGGAGACATGAACTTTTCTGCAAAGGGGGT
AAGTATAGTTTTTACGCTGTGCCCTTTCCTTTTTAATTCCCTTACGAGTTCACAAACT
TTGTAGGAGGCTATTCCTCCGCAAACTCCTATGAGGATATTCATtaagttaaatttaaaataacaag
tATG

    gsa --- aq_818 --- lnt Gene: gsa     GI: 15606182     BI number: aq_816     GOG: COG0001     Description: glutamate-1-semialdehyde aminotransferase Gene: aq_818     GI: 15606183     BI number: aq_818     GOG: COG0392     Description: putative protein Gene: lnt     GI: 15606184     BI number: aq_819     GOG: COG0815     Description: apolipoprotein N-acyltransferas AG G  A GC TA GT A  G TA TA GC AT AT AT AT GC T  T T  | TG GC G  A A  A A  A C  | T  |        T C  |      G  T G  |      A  T CG       T  T CG        AT CG        TA TG        GC TG       |  G AT       |  C TA       |  T TA       A  G T  |       AT C  |       TG G  |       GC CG        GC AT        GC TA        GT AT        GT TA        AT             CCTTTTTAATTCCCTTACGAGTTCACAAACTTTGTAGGAGGCTATTCCTCCGCAAACTCCTATGAGGATATTCATtaagttaaatttaaaataacaagtATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [H] COG0001 Glutamate-1-semialdehyde aminotransferase ... can be seen here [S] COG0392 Predicted integral membrane protein ... can be seen here [M] COG0815 Apolipoprotein N-acyltransferase ... can be seen here     ..................................................................................................................