                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:176 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G= -7.70 kcal/mol
Antiterminator: Size=41 nt.     Delta G= -8.80 kcal/mol
Anti-antiterminator:   Size=42 nt.     Delta G= -8.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AGATGCACATGTATTGAACGGCTTCTTTTTTGAATAAAACGAACTCGGCTTCGTAGGG
TTCGCTCACTTTCGTGTCCCACATGTAGGCACCGCCGAAGGGGTTTACCCAGATCTGT
TCGTTTTCTTCCATACACGTTTGAGCCCTTTTTACCGAAACTATATCGTCCATTAGCT
CACCGTCCGGCATCAGTACAGCCCATACCTTGTTGTTTTTGAGAGGATTGAGTAGAAA
GGTTACCGTCTTTTCCATGGATAAATATTCTAACCTTTTAAATCTTCTTTTTAGATGT
ATATTAATAAATG

    aq_918 --- aq_917 Gene: aq_918     GI: 15606247     BI number: aq_918     GOG: NOG12283     Description: putative protein Gene: aq_917     GI: 15606246     BI number: aq_917     GOG: NOG44374     Description: putative protei   T         T T  C      A  G C  G      C  T G  T      A  A G  A       CG CG        CG TG       |  C CG       C  A AT       T  C AT        GC        CC GC        TG       A  C CG        GC        TA |  C      C  C       TG A  T       TG        TA A  C       TA        GT A  A       TA        GC A  C       CG        GT T  T      A  |      G  G AT        CG        AT AT        TG        AT GC        CG        GC TG        GT        CG                         TTTTCTTCCATACACGTTTGAGCCCTTTTTACCGAAACTATATCGTCCATTAGCTCACCGTCCGGCATCAGTACAGCCCATACCTTGTTGTTTTTGAGAGGATTGAGTAGAAAGGTTACCGTCTTTTCCATGGATAAATATTCTAACCTTTTAAATCTTCTTTTTAGATGTATATTAATAAATG     ..................................................................................................................