                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:172 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G= -8.40 kcal/mol
Antiterminator: Size=34 nt.     Delta G= -5.20 kcal/mol
Anti-antiterminator:   Size=63 nt.     Delta G= -7.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTGTATGTGGTAGTTGTTCTCTATGTGCACACTTATCCAGTTCGCCCCCGCTTCCACG
AACTTTGGTATATACTTGTCAGGATTTTCTATCATAAGGTGGGCATCTATGGGAAGGG
AAGCCCTTTTTCTTATGTGAGATAGGATTTCGTACCCTGCGGTTATGTTGGGTACAAA
GTGTCCGTCCATAACGTCGTAGTGGAGTATATCCGCACCGCCCCTAATCGTGGCTTGT
ATCTGCTCTCCTATACACCACCAATCACCTGCGAGGATTGAAGGAGCTAAAAGTTTCA
TaatagttatATG

    tmk Gene: tmk     GI: 15606283     BI number: aq_969     GOG: COG0125     Description: thymidylate kinas GC C  T C  T C  C C  C C  A GC CG TA TA GC |  T |  T AT CG CG |  T       TA TA       A  A AT        CG TA        TG T  T       AT C  A       TG A  C       CG        GG C  T       TG       G  A AT       T  C      T  A CG       T  |      A  G GT        TA        TG T  |       AT        CG GC        GC        TA TA        GT       A  A A  |      |  A       CG TG        AT        GC CG        CG        GC TA        TG        GC                         TTTTTCTTATGTGAGATAGGATTTCGTACCCTGCGGTTATGTTGGGTACAAAGTGTCCGTCCATAACGTCGTAGTGGAGTATATCCGCACCGCCCCTAATCGTGGCTTGTATCTGCTCTCCTATACACCACCAATCACCTGCGAGGATTGAAGGAGCTAAAAGTTTCATaatagttatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [F] COG0125 Thymidylate kinase ... can be seen here     ..................................................................................................................