                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:195 nt.     Distance to run of Ts=2 nt.   Size=27 nt.     Delta G=-11.90 kcal/mol
Antiterminator: Size=31 nt.     Delta G= -4.30 kcal/mol
Anti-antiterminator:   Size=18 nt.     Delta G= -3.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTTTTTATCTCTTCTATCTTTTCTTTTGCCATTTCCTCAAAAATCTTTGCGTCAAAGT
ATCCGCCCGGCTCTACTACGTCTATGAGGTGGTGGGGAACTTTTTTCATACACTCAAG
AGGTTTTGCTGTTCCTATGTCCATGAACTTGTAAACCGCCATACTATCCGCACTTATG
ATTTCACCGTTCAGCTTTTGTGCTACACAACATGCGAGGTCTGACTTTCCTATCGCTG
TAGGTCCTCCGATTACGAGTATCTTCATaagtttatataaaatagttccacgagtataattaagaattATG

    gap Gene: gap     GI: 15606345     BI number: aq_1065     GOG: COG0057     Description: glyceraldehyde-3-phosphate dehydrogenas            CC           G  C            CG            CG           |  C        A           |  T      T  T           T  C       CG            AT        TA            TA       G  G AG        GC        CG A  T       AT        AT A  A      A  |       TG C  T      A  |       CG T  C      C  |       AT GC        TA        TG CG        GC        CG GC        CG        TG GC        GT        CG                         AACTTTTTTCATACACTCAAGAGGTTTTGCTGTTCCTATGTCCATGAACTTGTAAACCGCCATACTATCCGCACTTATGATTTCACCGTTCAGCTTTTGTGCTACACAACATGCGAGGTCTGACTTTCCTATCGCTGTAGGTCCTCCGATTACGAGTATCTTCATaagtttatataaaatagttccacgagtataattaagaattATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase ... can be seen here     ..................................................................................................................