                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:113 nt.     Distance to run of Ts=2 nt.   Size=24 nt.     Delta G= -7.70 kcal/mol
Antiterminator: Size=44 nt.     Delta G=-12.40 kcal/mol
Anti-antiterminator:   Size=47 nt.     Delta G=-10.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCCCCCCAAGGAATTTGGGAGGGGTCCTTTTGAGCGAAAACCTTTATCTCTTTTCCGT
CAACCACGATAGAGTCGTCTTTCGCTTCAACGCTTCCCTTAAATATCCCGTGAACCGA
GTCGTACTTCAGGAGATGTGCAAGGTGCTTTGCGTCTGTGAGGTCGTTAATCGCAACG
ATTTCTATTTCTTCTCTTCCCCAGGAAGCTCTGAAAAAGCTCCTCCCTATCCTACCGA
ATCCGTTTATCCCTACTTTTATAGCCATaattcttaattatactcgtggaactattttatataaacttATG

    miaA Gene: miaA     GI: 15606346     BI number: aq_1067     GOG: COG0324     Description: tRNA delta-2-isopentenylpyrophosphate (IPP) transferas   T         G G  C      A  G A  G      A  T G  T       CG C  A       GC C  C      |  T AT       |  T AT       |  T GC        TG TA        GC G  |       TG CG        AT CG        GC |  A       AT        TC CG       G  G      A  G TA       G  |      A  C AT        AT        TA TG        CG        TA AT        TA        GC A  G       TG        CG A  C       CG        TA TA        AT        GT TA       T  |       GT CG        GC        AT CG        CG        GC                         TATTTCTTCTCTTCCCCAGGAAGCTCTGAAAAAGCTCCTCCCTATCCTACCGAATCCGTTTATCCCTACTTTTATAGCCATaattcttaattatactcgtggaactattttatataaacttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase ... can be seen here     ..................................................................................................................