                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:86 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G=-12.90 kcal/mol
Antiterminator: Size=22 nt.     Delta G= -7.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATCCCCGAAGTTGTAAATGACCACCGCTTTTTCCTTTGAACCGCCGAATATACTGGTC
TCGGAAAGGGCAGTGTAGAATTCCTCCTCGCTTATCTCATCCCCCCACAGAACCGTGT
AATTCTCCCCGTACTTTTCCTTCAGCTTAGACAAAAAGGTTCTTATGAGATACTGCTC
TTCTCCATGAAGGACGAAGACCCTCTCCTTCGGAGGTTTTGTGAAAAAAGTTTTCTGG
AACTGGAATATTGTGGTTTCCACagttaaattaaatttaatacttaactctacaaagaggtaaaagccATG

    aq_1103 --- rpmF --- plsX --- fabH Gene: aq_1103     GI: 15606372     BI number: aq_1103     GOG: COG1399     Description: putative protein Gene: rpmF     GI: 15606371     BI number: aq_1102     GOG: COG0333     Description: ribosomal protein L32 Gene: plsX     GI: 15606370     BI number: aq_1101     GOG: COG0416     Description: PlsX protein Gene: fabH     GI: 15606369     BI number: aq_1099     GOG: COG0332     Description: 3-oxoacyl-[acyl-carrier-protein] synthase II            AC           G  C           A  C            AT            GC           C  |            AT   G        GC T  A       GC A  A       AT CG        AT CG        GC TA       T  | |  C      A  | CG        CG TA        CG TA        TA CG        CG TA        TG             TTTTGTGAAAAAAGTTTTCTGGAACTGGAATATTGTGGTTTCCACagttaaattaaatttaatacttaactctacaaagaggtaaaagccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG1399 Predicted metal-binding, possibly nucleic acid-binding protein ... can be seen here [J] COG0333 Ribosomal protein L32 ... can be seen here [I] COG0416 Fatty acid/phospholipid biosynthesis enzyme ... can be seen here [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III ... can be seen here     ..................................................................................................................