Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:105 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G=-10.50 kcal/mol
Antiterminator: Size=44 nt.     Delta G= -7.26 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAGCCTTTGAGTTTCTTTGAAAAGTTGAGTTTCTTCGTCTCGGGGAAGTAAACGATGT
ACTTTCCGGGGATTGATACCTTACAGGTTACCTTTGCACCTTTTAGATCCCTTTCCTT
CCTCTTTAACTGCACGATCACGCTGTCTCCTATTCTCAAATTCTTGCAGTTCTTCTTT
TCCTGAAGGAGGGCTTCTTTTGTAAGTCCAACGTCAAGGAAGAAACCGTCAAGGGCGG
GACATTCCTTCTTCACAAGTCCCTTTAAAAAAGCCCCCGTCCTGTACTTTTCCTTTCG
CCTCTCTACCTTG

    aq_1276


Gene: aq_1276     GI: 15606496     BI number: aq_1276     GOG: COG3494     Description: putative protei



 CC
T  T
C  A
T  T
G  T
T  C
C  T
G  C
C  A
A  A       CC
C  A      T  T
T  T       TG
 AT        TA
 GC        TA
C  T       CG
 AT        TG
 CG        TA
 GC        CG
 TA        TG
 CG        TG
 AT        GC
 AT        AT
            TCTTTTGTAAGTCCAACGTCAAGGAAGAAACCGTCAAGGGCGGGACATTCCTTCTTCACAAGTCCCTTTAAAAAAGCCCCCGTCCTGTACTTTTCCTTTCGCCTCTCTACCTTG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[S] COG3494 Uncharacterized protein conserved in bacteria ... can be seen here

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