                                                                        Gene putatively regulated by attenuation in A_aeolicus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:203 nt.     Distance to run of Ts=2 nt.   Size=16 nt.     Delta G= -7.60 kcal/mol
Antiterminator: Size=17 nt.     Delta G= -4.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAGACGGAAGCCTTGAGGGAGTAGATGTAGAGCCTTATAAAGAGATTAAAAAACATGT
GAAGAAACCCGTGATAGCCTCGGGAGGGGTTTCTTCTTTGGAAGATATTAAAAAGCTC
TACGGGATAGTTGAGGGAGTGGTTGTAGGAAAGGCGATATACGAGGGGAGGATAACCC
TTGAAGACTTGCAAAATTTTTAAaactctatatacttaaagtaaggtcttctgacgaggggagggcattcccgcaggtacctt
tgtcggaagcccttaagaagtacttttaggaggtcttgtagttATG

    cspC Gene: cspC     GI: 15606511     BI number: aq_1303a     GOG: COG1278     Description: cold shock protei   A T  G       GG A  C      G  A G  C       CG T  T       TG GC        CG CG        CG CG        GT CG        AT             TCTTCTTTGGAAGATATTAAAAAGCTCTACGGGATAGTTGAGGGAGTGGTTGTAGGAAAGGCGATATACGAGGGGAGGATAACCCTTGAAGACTTGCAAAATTTTTAAaactctatatacttaaagtaaggtcttctgacgaggggagggcattcccgcaggtacctttgtcggaagcccttaagaagtacttttaggaggtcttgtagttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1278 Cold shock proteins ... can be seen here     ..................................................................................................................