Gene putatively regulated by attenuation in A_aeolicus
Characteristics of the secondary structures
Terminator: Distance to gene:189 nt. Distance to run of Ts=1 nt. Size=38 nt. Delta G=-12.50 kcal/mol
Antiterminator: Size=17 nt. Delta G= -9.70 kcal/mol
Anti-antiterminator: Size=42 nt. Delta G= -8.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AACCTTTTTAATTTCCTCTAAGAAAATTTCCCTTTTGTCCATAGCGTTTGAAACCATA
AGAGTGGTGAGGGCATCCCTCACGAGTTGTGCCGTGGTTAAAGCCCTGTCTTTTGCAG
GTTTCAAGGTGGACTTTCTTATAAAGATAAGGGCGAATACGAGTAGGATCGTAAGGGA
TACTCCCCAAAGAGCGAGGAGTTTTAACAATAAATTGTGTCTCACaataatttaatactttaaatta
tttcccgaatttttcaggtgttgaaaaggaaattatgaatgtttaaattaatatactcaGCC
_v6
Gene: _v6 GI: lcl383315_383386 BI number: lcl383315_383386 GOG: ------- Description: tRNA-Th
AA
A C
GC
TA
T T TG
T A T T
G A G G
C G A C
G A GC
A | CG
TG AT
AT CG
CG TG
CG C T
T T A C T
G | C T C A
T | GC T A
T | GC A A
TG GC CG
TA AT GC
CG GC GC
CG TA GC
CG GC AT
GTCTTTTGCAGGTTTCAAGGTGGACTTTCTTATAAAGATAAGGGCGAATACGAGTAGGATCGTAAGGGATACTCCCCAAAGAGCGAGGAGTTTTAACAATAAATTGTGTCTCACaataatttaatactttaaattatttcccgaatttttcaggtgttgaaaaggaaattatgaatgtttaaattaatatactcaGCC
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