                                                                        Gene putatively regulated by attenuation in A_aeolicus_pl-ece1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:183 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G= -9.60 kcal/mol
Antiterminator: Size=46 nt.     Delta G= -8.40 kcal/mol
Anti-antiterminator:   Size=55 nt.     Delta G= -6.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCCAAACTGTCATACAAAGTTATACATACTTGAATCCGAAGAAAGGAAAATTGTCGTA
GCAGGGAGTGGTAATTTATCCTCTTTAGCCTGGAGGGGACCTCAGGAAGAGTTTTTTT
TGTAAtaattgaaaaggataacgtaattgaagaatgtgaaaggtattacaattatgtaaaaagtagggcaaggaaaataataagctccaccgattta
agaaaaaaggcatctgaaaatagtaagaaaattgaaaaacacttaaatctgtttatagaaactcaggaaccggaagtagtaagggaaGTG

    aq_aa27 --- aq_aa26 Gene: aq_aa27     GI: 10957062     BI number: aq_aa27     GOG: -------     Description: putative protein Gene: aq_aa26     GI: 10957061     BI number: aq_aa26     GOG: -------     Description: putative protei AA G  A G  A AT AT A  G       TT G  |      A  T A  |      A  A AT       T  T GC        GC CG        GC C  T      T  T T  A       GC         G A  G       AT       G  A A  |       GT        GC GC       |  T       GC TA       |  A       AT TG       |  G      G  | CG        GC        GC |  G       GC        TA A  A       AT        CG TG        CG        CG AT       |  G      G  | CG       G  A      A  | A  |      A  G      T  | TG       T  G       TA AT       G  G       TA TA        CG        CG TA        TA        TA GT        GC        CG                         TTTTTTTTGTAAtaattgaaaaggataacgtaattgaagaatgtgaaaggtattacaattatgtaaaaagtagggcaaggaaaataataagctccaccgatttaagaaaaaaggcatctgaaaatagtaagaaaattgaaaaacacttaaatctgtttatagaaactcaggaaccggaagtagtaagggaaGTG     ..................................................................................................................