                                                                        Gene putatively regulated by attenuation in A_fulgidus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:128 nt.     Distance to run of Ts=1 nt.   Size=27 nt.     Delta G=-14.50 kcal/mol
Antiterminator: Size=39 nt.     Delta G=-12.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTAAACTCTGTAGTCTGTGGATTCCCTTGAAATGCGCATgagagatacaacaccataatcttaataaaccc
ttttttcctcaagctgactgaGGGCCCGTGGCTCAGCCTGGTTAGAGCGCTCGCCTGATAAGCGAGA
GGTCCGGGGTTCGAACCCCCGCGGGCCCAtttttaaggtgggttaattgggcttttccaagattgggattgcttaggta
tgagctttatgagtatttacttttttgtaatacaaaattaaaaatcgaagagaggagaaatcgattaaggcagcttactcgttATG

    AF0073 Gene: AF0073     GI: 11497693     BI number: AF0073     GOG: -------     Description: hypothetical protei   A G  T T  A C  A CG GC CG TA CG |  A       GA G  G      C  A CG       T  C GT       T  C A  |       GC G  |       GC A  |       GC T  |      |  G T  |       GC GC        CG GC        CG TG        TG CG        GC CG        GC             CAtttttaaggtgggttaattgggcttttccaagattgggattgcttaggtatgagctttatgagtatttacttttttgtaatacaaaattaaaaatcgaagagaggagaaatcgattaaggcagcttactcgttATG     ..................................................................................................................