Gene putatively regulated by attenuation in A_fulgidus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:211 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G= -8.80 kcal/mol
Antiterminator: Size=14 nt.     Delta G= -3.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATCGGTATGAACACCACTCCGCAAAGTCATATAATCTCTTTGATGTGTCCCTCAAATG
GCCACCAGAAACGCCCTTAATGGCCATttttgtcaaaatctcctcaatgtcctgcttattgaaaacaaaacagaTAGC
CCCGGCCGGATTCGAACCGGCGTCGCCGGATCCAGAGTCCGGCAGGATTGACCGCTAC
CCCACGGGGCTtcgattcgaatggtacccaagggtttatcaaaattttggtttcaggaactccaggaaatggcaaacgatatatatttccac
aatttaaagcctacATG

    AF0081


Gene: AF0081     GI: 11497701     BI number: AF0081     GOG: -------     Description: hypothetical protei



            C
          A  G
          A  C
          A  C
           GC
           AT
          |  T
          C  A
          C  A
 AT        AT
c  G       CG
a  A       CG
t  T       GC
 cG        GC
 cG        TA
 gC        AT
            ttttgtcaaaatctcctcaatgtcctgcttattgaaaacaaaacagaTAGCCCCGGCCGGATTCGAACCGGCGTCGCCGGATCCAGAGTCCGGCAGGATTGACCGCTACCCCACGGGGCTtcgattcgaatggtacccaagggtttatcaaaattttggtttcaggaactccaggaaatggcaaacgatatatatttccacaatttaaagcctacATG
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