                                                                        Gene putatively regulated by attenuation in A_fulgidus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:189 nt.     Distance to run of Ts=3 nt.   Size=28 nt.     Delta G= -7.50 kcal/mol
Antiterminator: Size=41 nt.     Delta G=-12.70 kcal/mol
Anti-antiterminator:   Size=32 nt.     Delta G= -8.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGCTTGATGAGGCAGTCCGCACCAACTTTCCGCGAAACCTCGACTATTGCGGAAAAAA
GCTCCGGTGGTGGGCGGAGGGAGTAGATGAGAGAGGCCCCTTCATATATTTTGAGGTT
GGGCTTTGTCACGTCGTCAACGTAAAATCTGCAACCCTCAGGAGCTCTCCGCTCAACA
ACATCCGTTGCGAAAACCTCAAAGCCCCTCCTCGCCAGAAGCTCGGCTACCGCAGTAA
ATCTCCCTATTCCCACCTCCACGACCTTACCTCTGTAGTTTTCTGCTATGTAGTCGGC
AATTTGCAGCATG

    AF0739 Gene: AF0739     GI: 11498346     BI number: AF0739     GOG: COG0456     Description: ribosomal protein S18 alanine acetyltransferas             A           A  A           A  G           A  C            AT GC        GC T  A       GC T  G      |  G        A T  C       CG       G  G A  A       GT       T  A AT        TG       A  G CG        TG       G  A GC        AT       A  G GC        TG        TG |  T       CG        GC |  C      |  G      A  | CG       A  C       GC TA       G  G       GC GC        CG        GC AT        TA        AT TA        CG        GT GT        CG        GC                         ATATATTTTGAGGTTGGGCTTTGTCACGTCGTCAACGTAAAATCTGCAACCCTCAGGAGCTCTCCGCTCAACAACATCCGTTGCGAAAACCTCAAAGCCCCTCCTCGCCAGAAGCTCGGCTACCGCAGTAAATCTCCCTATTCCCACCTCCACGACCTTACCTCTGTAGTTTTCTGCTATGTAGTCGGCAATTTGCAGCATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG0456 Acetyltransferases ... can be seen here     ..................................................................................................................