Gene putatively regulated by attenuation in A_fulgidus
Characteristics of the secondary structures
Terminator: Distance to gene:158 nt. Distance to run of Ts=1 nt. Size=19 nt. Delta G= -6.90 kcal/mol
Antiterminator: Size=48 nt. Delta G= -8.64 kcal/mol
Anti-antiterminator: Size=76 nt. Delta G=-20.51 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGCCATTGACAAGCAGGCCGTGAGCGAGGCCACTGCTGTCGGCATTCCAGTCGTTGCC
CTCTGCGACTCCAACAACTCCTCCGCTGACGTTGACCTTGTCATACCCACAAACAACA
AGGGCAGAAGGGCTCTGGCCATTGTTTACTGGCTCCTCGCAAGGGAGATTGCGAAAAT
CAGGGGGCAGGACTTCACCTACAGCATTGAGGACTTCGAGGCCGAGCTTTAAgtttatttt
ttgttatcctaattatcaccattaatttgtagaaaattatataattatcttaggttacagactgcATG
AF1134 --- AF1135
Gene: AF1134 GI: 11498734 BI number: AF1134 GOG: ------- Description: hypothetical protein
Gene: AF1135 GI: 11498735 BI number: AF1135 GOG: ------- Description: hypothetical protei
CC
C T
G C
T T
TG
GC
CG
TA
GC
AT
| C
| C
| A
| A
| C
| A
| A
| C
| T CA
C C C C
C C C A
T T A A
T C T A
A C A C
CG C A
GC TA
GT GC
CG TA
TA TA
GC CG
T | CG
CG A G
GT GC
T | TA
C | TG G
AT G A G G
CG C | A C
C A A | AT
GC G | GC
GC TA AT
AT CG CG
GT G | G G
CG CG GC
GT CG GC
ATTGTTTACTGGCTCCTCGCAAGGGAGATTGCGAAAATCAGGGGGCAGGACTTCACCTACAGCATTGAGGACTTCGAGGCCGAGCTTTAAgtttattttttgttatcctaattatcaccattaatttgtagaaaattatataattatcttaggttacagactgcATG
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