Gene putatively regulated by attenuation in A_fulgidus
Characteristics of the secondary structures
Terminator: Distance from promoter:115 nt. Distance to gene:78 nt. Distance to run of Ts=0 nt. Size=20 nt. Delta G= -6.00 kcal/mol
Antiterminator: Distance from promoter:89 nt. Size=31 nt. Delta G= -8.50 kcal/mol
Anti-antiterminator: Distance from promoter:54 nt. Size=53 nt. Delta G= -8.32 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTCAAA-TAAACT. It has a score value of 62.25 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTCAAAAAGGGGTACTTCTCAGCCTCATAAACTCCCATCGGCCCTCCAAGAATAACGA
TAGCGTCAAAATCTGCCATTTTTGTTTCAGAATAGGCCTCTACGTAGTAGTAATCCAC
GCCCTCTCTGCTGAGCACCTCTTCGAGGTATCCCAGACCCTCCGCGGGATGGTTTTTT
ATGGCAGCAAAAATCATgttggtgtaaatgcacagctgaaagtaaagtttttgtttggtgctgtcgactcaagcttgcATG
AF1276
Gene: AF1276 GI: 11498875 BI number: AF1276 GOG: ------- Description: hypothetical protei
A
C C
C G
T C
A C
A C
T T
GC
AT
T |
GC
AT
TG T
GC T C
C T CG
A | TA
T | CG
CG CG
TA AT C
CG C A C G
| C G | T C
C A AT CG
GC GC CG
GC T C CG
AT C | A A
T C GC G |
AT TA AT
AT CG CG
GC TA CG
TTTTTTATGGCAGCAAAAATCATgttggtgtaaatgcacagctgaaagtaaagtttttgtttggtgctgtcgactcaagcttgcATG
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