Gene putatively regulated by attenuation in A_fulgidus
Characteristics of the secondary structures
Terminator: Distance to gene:97 nt. Distance to run of Ts=0 nt. Size=33 nt. Delta G= -8.30 kcal/mol
Antiterminator: Size=44 nt. Delta G= -3.80 kcal/mol
Anti-antiterminator: Size=39 nt. Delta G= -9.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAAGCACGACAGGATGACAATTGTTGGAGAGAAAGCCAAGGAAGTTGCTGACACCGCA
ATAAAAAACAACCTTCTCTCAAGGCTTGACCACGCAGCCTACCTCGGCAGGGAGCTGA
TGAAGGCCGAGATTGCAGCTTTGCTTAAAAAGAGCTACATTCAGGACAGGGAGTTGAA
TTTTGGGTTTTACCAGAAATAGctttttttgccattataacattattgttaaataggaaaatttatattgattaaagttgaatt
ggcgaaaccaagctacgggctattttttgcctattgcttgggATG
AF1411 --- AF1410
Gene: slgB-2 GI: 11499008 BI number: AF1413 GOG: NOG06466 Description: surface layer protein B (slgB-2)
Gene: AF1412 GI: 11499007 BI number: AF1412 GOG: ------- Description: hypothetical protei
GA
G C
A A
CG
TA TG
T A T G
C A A |
G A C | TT
TA A | T T
TG TA G A
TA CG GC
CG GT GC
GC AT TA
AT | G TG
C A G A TA
GC A A TA
TA AT A A
T T AT A |
AT AT GT
GC AT TA
A A TG TG
G | TG Gc
CG CG At
CG GT Gt
tttttgccattataacattattgttaaataggaaaatttatattgattaaagttgaattggcgaaaccaagctacgggctattttttgcctattgcttgggATG
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