                                                                        Gene putatively regulated by attenuation in A_fulgidus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:178 nt.     Distance to run of Ts=0 nt.   Size=20 nt.     Delta G= -6.40 kcal/mol
Antiterminator: Size=46 nt.     Delta G= -7.10 kcal/mol
Anti-antiterminator:   Size=19 nt.     Delta G= -3.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CAAAGGCTTGGTAGGTGCGAGGAAAAGCACCTTACCATCTTCGTTCAGCAATCTTGAG
GCGATAACAAGCGCGGCAATCGTGGTTTTCCCCAATCCCGTTGGAATCACAACCAGCG
TGTTTTTGGTCAGGGCGGTAGCTGCTATCGATATCTGATACATTCTCCTTTCAATCGT
ATTCTCCTTTATCAACGGATGCGTTACGTACTCCACagaacctgtttattctggtaaataaaaacatacctta
aatcccacaaatttagaaaaaagatatatagtatcagcacacataaactaacaATG

    AF1457 Gene: AF1457     GI: 11499052     BI number: AF1457     GOG: -------     Description: hypothetical protei            TT           T  C           T  C            GC            GC            TA           G  A           C  T           T  |           A  |           A  |           C  |            GC            GC           C  |            GC   A        CG        CA C  A      G  |      T  C G  T       AT       A  A GC        AT       A  A CG        CG        GC GT       A  G       GC CG       A  A       TA G  G       TA        TG AT        AT        GC AT        GC        CG                         TGTTTTTGGTCAGGGCGGTAGCTGCTATCGATATCTGATACATTCTCCTTTCAATCGTATTCTCCTTTATCAACGGATGCGTTACGTACTCCACagaacctgtttattctggtaaataaaaacataccttaaatcccacaaatttagaaaaaagatatatagtatcagcacacataaactaacaATG     ..................................................................................................................