Gene putatively regulated by attenuation in A_fulgidus
Characteristics of the secondary structures
Terminator: Distance to gene:188 nt. Distance to run of Ts=0 nt. Size=33 nt. Delta G= -8.90 kcal/mol
Antiterminator: Size=44 nt. Delta G=-13.80 kcal/mol
Anti-antiterminator: Size=55 nt. Delta G= -9.23 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATCCCCCCTTTGCTGACAGCAACACTCCCGGCATTGTATCTACCCCTGACAGGCTTTA
AGGTCAGCTATGATCTGCTGCCCGTTGTTGGATACCTAACATATTCGCAGTTTTTGCT
ACTCCTGCTGCAGCTTCAACGATAAtactcgctccactaattgacaggctcggagaaggctttcaggtaacgaaaattacca
ttctaagggacccgtatctgaactgcctcagctcttcacgatctcttcgctggtttacgttactttctacggcatgcaaaagcttagaaatggaggtgga
gcATG
AF1579
Gene: AF1579 GI: 11499174 BI number: AF1579 GOG: ------- Description: hypothetical protei
C
A C
T C
C C
T T
A G
TA
GC
TA CT
TG G A
A | AT
CG CG
GC TA
GT GT
C T GC
C T AT TA
C A A G A C
T A T C GC
C G T T GT
A | T | TA
C | CG TA
A | GC GC
A | GC TA
C | | C | T
G | | G T A
A | | T G T
CG AT C T
AT CG C C
GC AT CG
TA GT GC
CG TG TA
GC CG CG
TTTTTGCTACTCCTGCTGCAGCTTCAACGATAAtactcgctccactaattgacaggctcggagaaggctttcaggtaacgaaaattaccattctaagggacccgtatctgaactgcctcagctcttcacgatctcttcgctggtttacgttactttctacggcatgcaaaagcttagaaatggaggtggagcATG
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