                                                                        Gene putatively regulated by attenuation in A_fulgidus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:147 nt.     Distance to run of Ts=3 nt.   Size=22 nt.     Delta G= -8.10 kcal/mol
Antiterminator: Size=47 nt.     Delta G=-13.40 kcal/mol
Anti-antiterminator:   Size=16 nt.     Delta G= -5.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCATTTTCCTCGCCTATTTCTTTTCTGGAAGTGAAGTGATTGTTCCAAAGCTAAAAAG
TCTTGGACTTTTTGCAGTTGTGGCCGCCATGCTTCTTGCTCTTGCGAGGGTTTTCAGG
CTCGAAGCTGAGGCAGATTTCAGCTTAAGATTTTTCCTCAAGTGGATTCTGGTGGTGG
CCATTACCTTCACGATTTTGAGTGTCTTTATGCTTTTCCTGAGGGGAGTTGTATGAgc
ggttagctgacgatagcggaccattagaattatgttctgcgattacataaacatctaagagtggtagcGTG

    AF1583 Gene: AF1583     GI: 11499178     BI number: AF1583     GOG: COG1533     Description: conserved hypothetical protei            AG           G  G            CG            GT           |  T           |  T           T  T           T  C           C  A            TG            CG            GC           T  T           T  C            CG        AG            TA       C  A            TA        GT CT        CG        GT T  T       GC        AT CG       |  T       GC GC       T  G       TA TG       A  A       CG TA        CG        GC CG        CG        AT TG        GC        AT                         AAGATTTTTCCTCAAGTGGATTCTGGTGGTGGCCATTACCTTCACGATTTTGAGTGTCTTTATGCTTTTCCTGAGGGGAGTTGTATGAgcggttagctgacgatagcggaccattagaattatgttctgcgattacataaacatctaagagtggtagcGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [L] COG1533 DNA repair photolyase ... can be seen here     ..................................................................................................................