Gene putatively regulated by attenuation in A_fulgidus
Characteristics of the secondary structures
Terminator: Distance to gene:18 nt. Distance to run of Ts=2 nt. Size=14 nt. Delta G= -8.50 kcal/mol
Antiterminator: Size=78 nt. Delta G=-10.87 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATGCCTGTCCAGAATGCTTGGATTGAGCTTTGTGTCGAACATCAGCTGCGAGAACTTC
TTTGGGCCATCGCTTAGACTGTAGAGGATGTCGCTCACACCCTTCCTCCCGATAATCT
TAAGTACTTCCTTAACGCTGATATCGAGTTCCTCCATGTTCTCAGCCTCGATCACTTC
ACCCACcgttcaacacttctccctcttattcttaaagttatctttgtatagaaaaattatatttttgtaattacttttatgtttgcggggcgaaag
tccttatattttggagcccaatgtgcatttATG
AF1808
Gene: AF1808 GI: 11499396 BI number: AF1808 GOG: ------- Description: hypothetical protei
t
t a
a t
a a
at
at
at
gt
at
tg
at
ta
g a
t t
t t
t |
c |
t |
a |
t |
ta
gc
at
at
at
t t
t a
c t
t g
t t
a t
t t
t g
c c
tg
cg aa
cg g a
cg cg
t c gt
cg gc
ta gc
ta gt
tatattttggagcccaatgtgcatttATG
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