                                                                        Gene putatively regulated by attenuation in A_fulgidus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:214 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G= -7.90 kcal/mol
Antiterminator: Size=29 nt.     Delta G= -5.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCAGGTCGAGGCTTCTGTAAAAGCTCTCATCGGTCGGATCAGCAATTACAGCGTCGAA
CCCCTCGTCTTCGAGCAGCTCGATTTTTTCCTTGGACTTATCAACGGCAAGAACTTTT
TTGCCCGCAGCAGTCAGCTCTCTAACAAGACCTACACCGGCAGCTTCGCTGCCAATGA
CTATGTACTCGTACCTGCCGTTTTCGGTCATttcagaatcaaaaaatcgaggaagtattaaacgtttccggtggggt
ttatattcttcatttgcgatgtattcaaaaactcgaaaattttttatatATG

    AF2028 --- AF2027 --- AF2026 --- AF2025 Gene: AF2028     GI: 11499610     BI number: AF2028     GOG: NOG11756     Description: conserved hypothetical protein Gene: AF2027     GI: 11499609     BI number: AF2027     GOG: NOG14187     Description: conserved hypothetical protein Gene: AF2026     GI: 11499608     BI number: AF2026     GOG: NOG14885     Description: conserved hypothetical protein Gene: AF2025     GI: 11499607     BI number: AF2025     GOG: -------     Description: hypothetical protei   T T  A A  C       CT A  A      T  T CG        GC GC        CG A  G       TA C  |       CG T  |      C  C A  |      C  A GT       C  G GC       A  C CG        AT |  A       GC TA        CG GC        TA GC        GT             TTTTTCCTTGGACTTATCAACGGCAAGAACTTTTTTGCCCGCAGCAGTCAGCTCTCTAACAAGACCTACACCGGCAGCTTCGCTGCCAATGACTATGTACTCGTACCTGCCGTTTTCGGTCATttcagaatcaaaaaatcgaggaagtattaaacgtttccggtggggtttatattcttcatttgcgatgtattcaaaaactcgaaaattttttatatATG     ..................................................................................................................