Gene putatively regulated by attenuation in A_fulgidus
Characteristics of the secondary structures
Terminator: Distance to gene:150 nt. Distance to run of Ts=2 nt. Size=24 nt. Delta G= -9.00 kcal/mol
Antiterminator: Size=79 nt. Delta G=-22.60 kcal/mol
Anti-antiterminator: Size=33 nt. Delta G= -8.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
cgtgaaaatgggcgccaaactcctttacatagttcttttcacagatgtagcactgctcctcctgtcaagctttgttgaaatcggcgtgagaggtacttga
tgtacctttgcggccttgcaatgacagctgcgctgtcctgctactttttagcgttcttaaggattgctttgaagaaagtgttgtgagcaactgtctaaaa
taaaagaaaaatttataagctaagaaatagcatggtgaatgggtcagggtttggagccgtttgcaatgaataaactctggggtagatctggtgatgggcc
ATG
AF2130
Gene: AF2130 GI: 11499713 BI number: AF2130 GOG: ------- Description: hypothetical protei
g
t a
t t
cg
at
ta
gc
gc
at
gt
at
g |
tg
gc
| g
cg
gc
gc
c t
t t
a |
a |
a |
g |
t |
tg
gc
ta
ta
t |
g c |
t a g |
t a a |
g a at
t t cg g
t c ta t c
tg gc cg
cg ta gc
gc cg at
a g c c cg
at t t at
cg c | gc
ta c | t c
g g t | a |
ta cg at
cg gc cg
cg tg gc
tactttttagcgttcttaaggattgctttgaagaaagtgttgtgagcaactgtctaaaataaaagaaaaatttataagctaagaaatagcatggtgaatgggtcagggtttggagccgtttgcaatgaataaactctggggtagatctggtgatgggccATG
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