Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance to gene:148 nt. Distance to run of Ts=0 nt. Size=33 nt. Delta G= -8.50 kcal/mol
Antiterminator: Size=63 nt. Delta G=-11.40 kcal/mol
Anti-antiterminator: Size=49 nt. Delta G=-15.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCATCTTTTGTCATCACTTTTGCTTTTCCATCCAAAACGTCATCGCCATTCCCGCCAA
TAATTTCAGCTGAGGGACGAGGCGTTGGCAATCCACCTAATACTTCAGGACAAATGAG
GACTGTATCTTCTTTTTGCAGGAGCTCCTCTATTTTTGAAATGAGATTGTCGTTTCCA
TCATAACGACAAGCAATACCACCTAAACAAGCGCTAATTACGATCATattttcatctccaataaa
aaatattaattaccacgccaaattcccttccgactccttatttataagtgaggtgataaaaATG
BA_0038
Gene: BA_0038 GI: 21397413 BI number: BA_0038 GOG: ------- Description: HTH_ASNC, helix_turn_helix ASNC typ
AA
C T
GC
GC
TA
T |
G |
C |
T GC
T T GC
A C AT
A A G A
T G C A
A C A T
AT G A
CG GC C
C A GT T T
G | AT T T
CG GC C T
CG TA T T
CG CG AT
TA G G TG
| C A A GC
T G C C TA
A A TA CG
CG TA | G
CG TA | A
GC AT | G
CG A G | C
T T T A AT
AT A | GC
CG A | GC
TG CG AT
GC CG GC
TATTTTTGAAATGAGATTGTCGTTTCCATCATAACGACAAGCAATACCACCTAAACAAGCGCTAATTACGATCATattttcatctccaataaaaaatattaattaccacgccaaattcccttccgactccttatttataagtgaggtgataaaaATG
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