Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance to gene:40 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-12.10 kcal/mol
Antiterminator: Size=75 nt. Delta G= -6.22 kcal/mol
Anti-antiterminator: Size=42 nt. Delta G= -5.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATTAATGGGACGTGTACCGAGGTTATTAAAATCCGGTATCCTCTGGATGTACAAATAT
CATAACGGTTAAtacttaaaaggctgtctactaattagacagtctcttttatgagttaaaatataattatcagacacatttttctcaatat
ggataatgatttatttttcatttttatattaaaaactattgatgaacagtgtatgctatttataagttgttttatttcctttaagaccgaattcattcgg
tcttattttttgtgttgtaaatacttttataggaggcatttcatttcacttATG
BA_0046
Gene: BA_0046 GI: 21397421 BI number: BA_0046 GOG: ------- Description: hypothetical protein predicted by GeneMar
tt
t a
ca
cg
ta
t c
tc
ag
ta
ta
tt
t t
gc
ta
t
g
a
a
ta t
g t a
tg t
gc |
at |
c a |
at t
at t
gt a
ta t tc
at c t a
g a g at
ta t at
tg a gc
at t cg
t t g cg
cg t at
at g gc
at a at
at c at
at a ta
ttttttgtgttgtaaatacttttataggaggcatttcatttcacttATG
..................................................................................................................