                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:184 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G= -9.50 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -9.90 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G=-10.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AATTAAGTGAAGATGAGCTAGAAGAGTATCAATTTTACATTGAAGAAAATGGTTGGGG
ATTCTAGtcagaactcgttcattttgaaaaggagaatcttgtgaaggttcttcttttttacttggaaacaccatacgaattgaaattttgtaaaa
tacaataaaaaatgagaatttgaggtaggcttgtcaataacgtgagactatggcactatatagaaatgctgtacaaattttatttatcgagatgtaaaca
tcaattttgatttttacgtataaataatgaacggaggaaatgaatttATG

    BA_0049 Gene: BA_0049     GI: 21397424     BI number: BA_0049     GOG: COG2824     Description: TFIIE_alpha, TFIIE alpha subuni AG A  A G  A TA TA AT        gt CG       c  t A  |      t  c T  |      c  a T  |       at T  |       at TG        gt AT        at AT        cg CG        ta TG       |  a        t A  G      |  a      g  g T  G      |  a       ta G  A      G  g       ta A  |      A  g       cg G  |       Ta        tg AT        Cg        at AT        Ta        at GC        Ta        gc AT        At        at TA        Gc        gt CG        Gt        gc Gt        Gt        at                         tttttacttggaaacaccatacgaattgaaattttgtaaaatacaataaaaaatgagaatttgaggtaggcttgtcaataacgtgagactatggcactatatagaaatgctgtacaaattttatttatcgagatgtaaacatcaattttgatttttacgtataaataatgaacggaggaaatgaatttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism ... can be seen here     ..................................................................................................................