Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance to gene:127 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-16.80 kcal/mol
Antiterminator: Size=33 nt. Delta G= -4.60 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G=-17.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aagcggctcgttcaaaatgtgagggggatggagcttctgacatagaggcgctttttgcctcggcggaagaagcgaagccaccgaacattttagccgctgg
agctagatattatctagcggctcgttcaaagtcacttgctaaaaggagaccaaatttggtctcctttttttatttaaataacaatcatccgttaacatca
taaaacaaaattggaaatccttctcaaaaaatgcgataattgatactatatagtgaatcgttcacacatatacaatcaaaaaaacatagggggacgacac
ATG
BA_0059
Gene: BA_0059 GI: 21397434 BI number: BA_0059 GOG: ------- Description: hypothetical protein predicted by GeneMar
a
g t
a a
t t
c t
g a
at
gc c
gt a t
ta c t
cg tg
gc gc at
cg at a t
cg a a at
gc a a cg
at c | cg
t c ta at
t | ta gc
t | g g at
t | cg gc
a | ta gc
cg cg at
at | a at
at gc at
gc gc at
tttatttaaataacaatcatccgttaacatcataaaacaaaattggaaatccttctcaaaaaatgcgataattgatactatatagtgaatcgttcacacatatacaatcaaaaaaacatagggggacgacacATG
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