Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance from promoter:63 nt. Distance to gene:151 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G= -8.20 kcal/mol
Antiterminator: Distance from promoter:41 nt. Size=29 nt. Delta G= -5.10 kcal/mol
Anti-antiterminator: Size=78 nt. Delta G=-17.87 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaaa-tataga. It has a score value of 61.58 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgaaatgagtaagtccttgtaaggtatagaaaaaaagacactctttcgagtgtctttcaagatgacaaaatgtgccaattgcttgagtttgataaggcg
ctaatatccgttttaacgccttttctttgatcaagaagtgtagcaacagcgattcaaataaattgtaccatttgttcagtgggcgtgcgtatgcaattgt
gcatatttcaattagagggaaatgaggaacgaaaaatgaatgagtatatatagcatatttgattaggggagagaaggATG
BA_0062
Gene: BA_0062 GI: 21397437 BI number: BA_0062 GOG: NOG25222 Description: hypothetical protein predicted by GeneMar
tt
t c
cg
ta
cg
at
cg
at
gc
at
at
at
| c
| a
| a
| g
| a
| t
| g
| a
a c
a a
a a
a a
g a
at
tg
at
tg
gc
gc
a a tg
a a t a
t | cg cc
g | gt t g
t | | t a t
t | | t t t
c | | g at
c | t a at
t | t t ta
g | a a c a
at a a gc
at cg cg
tg cg gc
gc gc gc
at tg at
gt gc at
ttctttgatcaagaagtgtagcaacagcgattcaaataaattgtaccatttgttcagtgggcgtgcgtatgcaattgtgcatatttcaattagagggaaatgaggaacgaaaaatgaatgagtatatatagcatatttgattaggggagagaaggATG
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