Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance from promoter:89 nt. Distance to gene:0 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-15.30 kcal/mol
Antiterminator: Distance from promoter:36 nt. Size=69 nt. Delta G= -5.36 kcal/mol
Anti-antiterminator: Distance from promoter:8 nt. Size=38 nt. Delta G= -6.90 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGAAC-TAGAAT. It has a score value of 66.27 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAACAACTTCTTGAAGCGCCGCTAGAATCAGTAACGATTGAAGCCGAAGCTTTAGG
TATTACGGCTGGCACAATCGGAAAAGAAGCATTATTAAAAATGAGATAAgcatatatcgtccct
ccttcttgcatagaaatgatataagaaggaggtttttttATG
BA_0080
Gene: BA_0080 GI: 21397455 BI number: BA_0080 GOG: NOG07107 Description: hypothetical protein predicted by GeneMar
AA
A T
A G
A A
TG
TA
AT
TA
TA
A |
Cg
Gc
| a
| t
A a
A t
T G a
T A A t
T G A c
CG A g
GT At aa
| A Gc g a
AT Gc at
AT | c tg
| A | t | a
GC | c a t
CG C c c a
CG T t gt
GC A t ta
AT A c ta
| G C t cg
| G At ta
| C Cg ta
A A Gc cg
GC | a cg
TA Gt ta
TA Ta cg
AT Cg cg
tttttttATG
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