Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance from promoter:173 nt. Distance to gene:20 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G=-11.50 kcal/mol
Antiterminator: Distance from promoter:153 nt. Size=38 nt. Delta G= -3.90 kcal/mol
Anti-antiterminator: Distance from promoter:119 nt. Size=51 nt. Delta G= -3.20 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TCGATT-TAGAGT. It has a score value of 63.59 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCGATTTTTATTACAAAAGGGATAGAGTATAACAGTGCCCGAAAAGATGTAAATGCCA
TGTATACGCAAGGGTTTGCAAATATCGGAAGTGGTGAAGGACAACAATGGGGAATTGG
ATTATCAAATGGTGGAAATGTAGAAGAAAGTATTCATAATATGTATATCGTCGTATTC
CAAACAATTGCAGATTATTTGAATAGAGGATGAgggagcctgtaaacgaggcttcttatttttttatgtagaagct
agtttaagtATG
BA_0102
Gene: BA_0102 GI: 21397477 BI number: BA_0102 GOG: ------- Description: hypothetical protein predicted by GeneMar
T
A T
T C
G C
C A
T A T
G A A A
C C A G
T A G A
A A TG a
T T TG a a
AT TA t c
TG AT g g
GC TG ta
TA TA cg
A G | g cg
TA | g gc
AT | g at
AT | a g |
TA | g gt
| T A c gc
| T Gc At
AT At Gt
CG Cg Ta
TA Gt At
TA Ta Gt
AT Ta Gt
ttttatgtagaagctagtttaagtATG
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