                                                                        Gene putatively regulated by attenuation in B_anthracis_A2012

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:199 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-14.50 kcal/mol
Antiterminator: Size=40 nt.     Delta G= -4.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

aggtaaatataatctcaagttttctgtattaatatcctcatataatttacatggaatataaagggttttataagcatgtcgaatattttcgacatgctta
tttgtgcctagtaaactcgttttttctaaatgtcgaaaaatatttcctacatatttataagcggaaatatagggttttaaatgtttttatagtattttat
aaattatctaaataattatttgtatccaataattttaaacaatgatataattttgaagaggggtaaaaaacagataaatcaagtcataggggtgaattac
ATG

    BA_0116 Gene: BA_0116     GI: 21397491     BI number: BA_0116     GOG: COG0506     Description: Pro_dh, Proline dehydrogenas gg g  t at at at ta at ta a  a a  g       at g  |      t  t gc        at ta        at at        gc cg        cg at        ta |  c       gc tg        ta ta        at ta        cg at        gc             ttatttgtgcctagtaaactcgttttttctaaatgtcgaaaaatatttcctacatatttataagcggaaatatagggttttaaatgtttttatagtattttataaattatctaaataattatttgtatccaataattttaaacaatgatataattttgaagaggggtaaaaaacagataaatcaagtcataggggtgaattacATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0506 Proline dehydrogenase ... can be seen here     ..................................................................................................................