Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance from promoter:139 nt. Distance to gene:20 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G=-11.50 kcal/mol
Antiterminator: Distance from promoter:71 nt. Size=78 nt. Delta G= -9.47 kcal/mol
Anti-antiterminator: Distance from promoter:46 nt. Size=52 nt. Delta G= -4.00 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGAAG-TAGAAG. It has a score value of 64.26 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAAGGAGATCTTCCTGTCATTCTAGAAGTAATTCAACAAATGCATGAAGTTCCATA
TACGAAAGGTGCACAGCGCGTTGCAACAACAATTCGTATCGATGATCGTCGTGATAAA
GTAAGCACAATGGAGAAAAAATTAAACTCTGTTCGATCAAAATTATAAagaaaagcagcgatct
tcgctgcttttttcatataggaggtagataagATG
BA_0117
Gene: BA_0117 GI: 21397492 BI number: BA_0117 GOG: NOG13816 Description: hypothetical protein predicted by GeneMar
A
A T
A T
A A
A A
A A
GC
AT
GC
GT
TG
AT
AT
C C
A G
AT C A
G C G T
TG A C
AT A A
GC T A
CG G A
T | A A
A | AT
T | AT
GT TA
CG AT
TA | A
| T | A
T A | a
A A | g
A A | a
CG | a
AT | a
A A G a c
C A Tg t t
A G Gc a t
A C C a gc
C A Tg cg
GC Gc gc
TA Cg at
TA Ta cg
GT At gc
CG Gc at
tttttcatataggaggtagataagATG
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