Gene putatively regulated by attenuation in B_anthracis_A2012
Characteristics of the secondary structures
Terminator: Distance from promoter:57 nt. Distance to gene:67 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-13.00 kcal/mol
Antiterminator: Distance from promoter:28 nt. Size=44 nt. Delta G= -4.70 kcal/mol
Anti-antiterminator: Distance from promoter:3 nt. Size=47 nt. Delta G=-14.00 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGGGT-TATATT. It has a score value of 71.62 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGGGTAGGAGGCGGCTTTATTATATTAGCGCTGCTTTGTGCGATTTTCTCGATTACG
AGAGGACGTTCTACTCAGTTTGCAAAAGAAGAATCTATCGTTTGAtaggttcttttttatttgtaaa
aaatggaagggtttggtgggtagatggagaaaggtgtatatagcgaggtgatggaaaatgATG
BA_0122
Gene: BA_0122 GI: 21397497 BI number: BA_0122 GOG: ------- Description: hypothetical protein predicted by GeneMar
TT T
A A T G
GC T C
CG G A
TA A A
CG C A
TA TA
TG CG
TG A A
TA TA TT
A | CG G T
GC TA CG
CG TA TA
GT G | At
T T C | Ta
G C AT Cg
T T GC Tg
T A GT At
T C A A At
C T G | Gc
GC AT At
TA GC At
CG CG Gt
GT AT At
ttatttgtaaaaaatggaagggtttggtgggtagatggagaaaggtgtatatagcgaggtgatggaaaatgATG
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